The structure of a protein that is sending electrical pulses between neurons
in your brain as you read this article has been fully mapped for the first time
using Lawrence Berkeley National
Laboratory's Advanced Light Source. This much-anticipated milestone could
lead to new treatments for neurological diseases and a better understanding
of how the nervous system controls movement, memory, and learning.
Keeping pace with genomics. Berkeley Lab's Peter Zwart at the Advanced Light Source's beamline 5.0.2, which is equipped to churn out atomic-scale resolution images of proteins.
The complete atomic-level architecture of the protein, called a glutamate
receptor, caps more than 11 years of painstaking work by a team of scientists
led by Eric Gouaux of the Oregon Health and Science University. The team's
research was featured on the cover of the December 10, 2009 issue of the journal
Glutamate receptors are lodged in the membranes of neurons. When a chemical
neurotransmitter called glutamate attaches to the receptor, a channel opens
in the membrane that allows ions to stream through. In this way, chemical signals
are converted to electrical signals capable of being relayed between neurons
and along nerves.
Although glutamate receptors and other neurotransmitter receptors are linchpins
of the nervous system, their structure was poorly understood until now.
“This is the first blueprint of this incredibly important receptor. No
one knew what it looked like,” says Gouaux, a pioneer in determining the
atomic structure of neurotransmitter receptors and transporters.
With the three-dimensional structure of the protein now in hand, scientists
can begin to explore how it mediates neural traffic: how does it help people
learn new tasks, form fresh memories, and ride a bicycle? Scientists can also
study what happens when the protein breaks down, a neural ‘pothole'
that is believed to contribute to Alzheimer's, schizophrenia, and other
“Knowing the receptor's structure will help scientists design molecular
therapies that fight disease by altering the receptor's function,”
explains Gouax. “It also gives everyone who studies the brain a model
of how the many kinds of glutamate receptors are structured. It provides a new
window into how the brain works.”
One of the scientists' final stops on their journey to determine the
protein's structure was the Advanced Light Source, a national user facility
located at Berkeley Lab that generates intense light for scientific research.
The team started with a rat glutamate receptor, which was then crystallized
and brought it to the Advanced Light Source, where it was exposed it to a beam
of X-rays. The pattern in which X-rays scatter off of the atoms in the protein
crystal was measured by a detector. This data was then translated by a computer
program into a three-dimensional model of the protein.
This technique, called protein X-ray crystallography, was conducted at one
of five Advanced Light Source beamlines operated by the Berkeley Center for
“The glutamate receptor was characterized at beamline 5.0.2, which is
our brightest beamline and is ideally suited to determine the structure of proteins
at an atomic-level resolution,” says Peter Zwart of Berkeley Lab's
Physical Biosciences Division. “The number of photons in the beam is very
high. This is important because more photons reaching the crystal means a stronger
signal and a correspondingly shorter time to conduct the experiment.”
Such speed is needed to keep pace with the growing flood of proteins being
generated by genomic studies of species and environmental samples. Each protein
produced by a newly discovered gene must be structurally characterized in order
to determine its function. To accommodate this demand, the Berkeley Center for
Structural Biology boasts several tools that enable fast and efficient protein
At beamline 5.0.2, for example, a robot automatically mounts and aligns protein
crystals in the beamline. This enables faster data acquisition and eliminates
the human errors that inevitably crop up in a repetitive procedure.
In addition, after the crystallographic data is obtained at the beamline, it
is fed to a computer program called PHENIX that quickly generates a three-dimensional
model of the protein. The program extracts the best data from the X-ray measurements,
which it uses to piece together the protein's atom-by-atom structure. It was
developed by an international collaboration of scientists led by Paul Adams,
the acting director of Berkeley Lab's Physical Biosciences Division.